Updated Cellpose + illumination correction

ef26aa6 Update test config
a2097e4 Remove all statement
20b3e2f add all
4e07484 Add minimal dask version
2c36dd9 Style
9f0267b Implement substract mask
900fc3e Bugfix channel index in segmentation
a774b0f Add option for precomputed correction images
2e5100b Fix segment tests
6fed056 Restructure cellpose execution
b74936e Multi channel segmentation
2451995 nbatches to groups
0433e09 Per channel cellpose
57874e9 style enforcement
36e58a7 Documenation update
ae66efd Meta naming
6d161c1 Style enforcement
7c31809 Switch to map partitions
bf36dc2 Merge pull request #52 from ScalableCytometryImageProcessing/refactor
dcabe7e Merge pull request #51 from ScalableCytometryImageProcessing/jones2006
4329213 Fix too complex function + test parameters
4460257 Update test config + noop if downscale is 1
731eeff Add yaml correction settings
4c85b23 Implement scaling to overcome memory issues
e4814c3 Switch median filter functions
d851332 parallelize finish operation
a9e8fe8 Switch to memory efficient but slow medfilt
6d2ec1f Bugfix median filter + deterministic test
546235a Missing keyword
ef0f62b style enforcement
2c6e49c Extend test
fcea8e8 Convert to regular float
6cbedc8 Add minmax test
9115a8e Bugfix nan after correction
b847f2b Bugfixes and add median filter size
d2c3623 Add jones 2006 illumination correction
81bd475 Fix all tests after refactor
49bbd10 Initial refactor
b534057 Make multi mask compatible with other data types
d24d68f Fix example yml config
30a4cc9 Pass smooth parameter as array
98fcfca Add test case
edbe3c9 Move tests to tests folder
45f8d44 Check if edge is foudn
2c9b1ba Remove graph viz
7a704b8 Keep regions
609bd30 Test a number of nbins for threshold minimum
7d5a9c5 Add and test spot mask + update threshold mask
568b902 Rely on unknown divisions
dae366b Update cli test
ccb2547 Add unique id for concatenation + test multi mask
14bd7b2 Initial multi mask implementation
baafc1a Add runtime none check
0c6223f Test cli
646c50b Add oversampling possibility
1b0414e Add limit option to cli
2103d1a Update test with sampling to limit
fd7fff6 Implement limits with random sample from bag
f265f8d Merge branch 'master' of github.com:ScalableCytometryImageProcessing/SCIP
3353676 Add requirement
90386ad Test main function + anndata saving warnings
3a0062b Repartition
3f71c47 Update documentation layout
d41951b Documentation for export module
79768b8 Remove references to report
b9aa65e Skip cellpose if executing on github actions
89ef7cb Remove benchmarking code
43d52c9 Remove dead code