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37 changes: 37 additions & 0 deletions frag-struc.yaml
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Name: RNA structure by fragmentation frequency
Description: "The fragSTRUC project devises a software to extract RNA secondary structure information from Illumina datasets, based on divalent ions in standard RNA-seq library preparation fragmenting sequences at non-base-paired regions of RNA."
Documentation: https://github.com/yuukiiwa/RNA_structure_by_fragmentation_frequency
Contact: "[fragSTRUC team](https://github.com/yuukiiwa/RNA_structure_by_fragmentation_frequency)"
ManagedBy: "The Genome Institute of Singapore (https://www.a-star.edu.sg/gis) and UMass Chan Medical School's RNA Therapeutics Institute (https://www.umassmed.edu/rti/)"
UpdateFrequency: Datasets will be updated periodically as additional data is generated.
Tags:
- RNA structure
- genomic
- transcriptomics
- life sciences
- Illumina sequencing
- bulk RNA sequencing
- bioinformatics
- bigwig
License: "[CC BY 4.0](https://creativecommons.org/licenses/by/4.0/)"
Citation: "In addition, please cite Yuk Kei Wan and Leonard Schärfen Hidden structural information in RNA sequencing data."
Resources:
- Description: RNA structure by fragmentation frequency
ARN: arn:aws:s3:::frag-struc
Region: ap-southeast-1
Type: S3 Bucket
Explore:
- '[Browse Bucket](http://frag-struc.s3-website-ap-southeast-1.amazonaws.com/)'
DataAtWork:
Tutorials:
- Title: Accessing the fragSTRUC dataset on AWS
URL: https://github.com/yuukiiwa/RNA_structure_by_fragmentation_frequency/blob/main/README.md
AuthorName: Yuk Kei Wan and Leonard Schärfen
Tools & Applications:
- Title: "fragSTRUC: RNA structure by fragmentation frequency"
URL: https://github.com/lschaerfen/fragstruc
AuthorName: Yuk Kei Wan and Leonard Schärfen
Publications:
- Title: Hidden structural information in RNA sequencing data.
URL: In Preparation
AuthorName: Yuk Kei Wan and Leonard Schärfen