BDSP Projects

datasets/bdsp_credentialed_projects.yaml

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+Name: Brain Data Science Database 3
+Description: This collection unifies multiple brain datasets spanning critical care, sleep medicine, cardiopulmonary health, infectious diseases, and other aspects of clinical neuroscience. It includes large-scale electroencephalography (EEG) and polysomnography (PSG) recordings, brain imaging data (MRI, CT, PET), and electronic health records (EHR) data supporting research in areas such as epilepsy, delirium, coma, sleep depth, sleep-related breathing disorders, burst suppression, meditation, subarachnoid hemorrhage, cardiac arrest, and neuroinfectious diseases. All data is de-identified and includes algorithmic tools and reproducible code. Access requires (1) submitting proof of CITI training certification (research ethics training for human subjects research - see https://bdsp.io/about/citi-course/); (2) signing a data use agreement that prohibits re-identification, requires data security, restricts sharing, limits use to non-commercial research, and mandates reporting any potentially identifying information.
+Documentation: https://bdsp.io/about/database/#credentialed
+Contact: contact@bdsp.io
+ManagedBy: "[Brain Data Science Platform](https://bdsp.io/)"
+UpdateFrequency: New data is added as soon as it is available.
+Tags:
+  - aws-pds
+  - neurophysiology
+  - medicine
+  - machine learning
+  - neuroscience
+  - deep learning
+  - life sciences
+  - bioinformatics
+
+License: "[BDSP Restricted Health Data License 1.0.0](https://bdsp.io/content/heedb/view-license/4.0/)"
+Citation: Refer to individual project citations in documentation
+Resources:
+
+  - Description: The Human Sleep Project (HSP)
+    ARN: aws s3 ls s3://arn:aws:s3:us-east-1:184438910517:accesspoint/bdsp-credentialed-access-point/ 
+    Region: us-east-1
+    Type: S3 Bucket
+    Explore: https://bdsp.io/content/hsp
+
+  - Description: Boston Children’s Hospital Sleep Corpus
+    ARN: aws s3 ls s3://arn:aws:s3:us-east-1:184438910517:accesspoint/bdsp-credentialed-access-point/ 
+    Region: us-east-1
+    Type: S3 Bucket
+    Explore: https://bdsp.io/content/l8c86mgywuneuy74ae71
+
+  - Description: Harvard Electroencephalography Database
+    ARN: aws s3 ls s3://arn:aws:s3:us-east-1:184438910517:accesspoint/bdsp-credentialed-access-point/ 
+    Region: us-east-1
+    Type: S3 Bucket
+    Explore: https://bdsp.io/content/harvard-eeg-db
+
+  - Description: Harvard-Emory ECG Database
+    ARN: aws s3 ls s3://arn:aws:s3:us-east-1:184438910517:accesspoint/bdsp-credentialed-access-point/ 
+    Region: us-east-1
+    Type: S3 Bucket
+    Explore: https://bdsp.io/content/heedb/4.0/
+
+  - Description: NIDX - Identifying Neuroinfectious Diseases in Electronic Health Records
+    ARN: aws s3 ls s3://arn:aws:s3:us-east-1:184438910517:accesspoint/bdsp-credentialed-access-point/
+    Region: us-east-1
+    Type: S3 Bucket
+    Explore: https://bdsp.io/content/nidx/1.0/
+
+  - Description: Automated phenotyping of mild cognitive impairment and dementias using electronic health records - Data and Code
+    ARN: aws s3 ls s3://arn:aws:s3:us-east-1:184438910517:accesspoint/bdsp-credentialed-access-point/ 
+    Region: us-east-1
+    Type: S3 Bucket
+    Explore: https://bdsp.io/content/mci-ad-nlp/1.0/
+
+  - Description: Identification of patients with epilepsy using automated electronic health records phenotyping - Data and Code
+    ARN: aws s3 ls s3://arn:aws:s3:us-east-1:184438910517:accesspoint/bdsp-credentialed-access-point/ 
+    Region: us-east-1
+    Type: S3 Bucket
+    Explore: https://bdsp.io/content/nax-epilepsy-nlp/1.0/

datasets/bdsp_open_projects.yaml

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+Name: Brain Data Science Database 1
+Description: This collection unifies multiple brain datasets spanning critical care, sleep medicine, cardiopulmonary health, infectious diseases, and other aspects of clinical neuroscience. It includes a variety of types of clinical neuroscience data including electroencephalography (EEG) and polysomnography (PSG) recordings, and supporting data to enable research in diverse areas of clinical neuroscience such as epilepsy, delirium, coma, and sleep medicine. All data is de-identified and includes code to reproduce results in accompanying research publications. The data is available for non-commercial research use and is open access.
+Documentation: https://bdsp.io/about/database/#open
+Contact: contact@bdsp.io
+ManagedBy: "[Brain Data Science Platform](https://bdsp.io/)"
+UpdateFrequency: New data is added as soon as it is available.
+Tags:
+  - aws-pds
+  - neurophysiology
+  - medicine
+  - machine learning
+  - neuroscience
+  - deep learning
+  - life sciences
+  - bioinformatics
+
+License: "[Open Data Commons Attribution License v1.0](https://bdsp.io/content/rhofbas/view-license/1.0/)"
+Citation: Refer to individual project citations in documentation
+Resources:
+  - Description: Assessing Risk of Health Outcomes From Brain Activity in Sleep
+    ARN: aws s3 ls s3://arn:aws:s3:us-east-1:184438910517:accesspoint/bdsp-open-access-point/
+    Region: us-east-1
+    Type: S3 Bucket
+    Explore: https://bdsp.io/content/rhofbas/1.0/
+
+ - Description: The Human Burst Suppression Electroencephalogram of Deep Hypothermia
+    ARN: aws s3 ls s3://arn:aws:s3:us-east-1:184438910517:accesspoint/bdsp-open-access-point/
+    Region: us-east-1
+    Type: S3 Bucket
+    Explore: https://bdsp.io/content/dhypothermia/1.0/
+
+  - Description: Visual EEG-Based Grading of Delirium Severity and Associations with Clinical Outcomes (VE-CAM-S)
+    ARN: aws s3 ls s3://arn:aws:s3:us-east-1:184438910517:accesspoint/bdsp-open-access-point/
+    Region: us-east-1
+    Type: S3 Bucket
+    Explore: https://bdsp.io/content/ve-cam-s/1.0/

datasets/bdsp_restricted_projects.yaml

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+Name: Brain Data Science Database 2
+Description: This collection unifies multiple brain datasets spanning critical care, sleep medicine, cardiopulmonary health, infectious diseases, and other aspects of clinical neuroscience. It includes large-scale electroencephalography (EEG) and polysomnography (PSG) recordings, brain imaging data (MRI, CT, PET), and supporting data to enable research in diverse areas of clinical neuroscience such as epilepsy, delirium, coma, sleep depth, sleep-related breathing disorders, meditation, subarachnoid hemorrhage, cardiac arrest, neuroinfectious diseases, and audiology. All data is de-identified and includes algorithmic tools and reproducible code. Access requires signing a data use agreement that prohibits re-identification, requires data security, restricts sharing, limits use to non-commercial research, and mandates reporting any potentially identifying information.
+Documentation: https://bdsp.io/about/database/#restricted
+Contact: contact@bdsp.io
+ManagedBy: "[Brain Data Science Platform](https://bdsp.io/)"
+UpdateFrequency: New data is added as soon as it is available.
+Tags:
+  - aws-pds
+  - neurophysiology
+  - medicine
+  - machine learning
+  - neuroscience
+  - deep learning
+  - life sciences
+  - bioinformatics
+
+License: "[BDSP Restricted Health Data License 1.0.0](https://bdsp.io/content/saheeg/view-license/1.0/)"
+Citation: Refer to individual project citations in documentation
+Resources:
+  - Description: Automated EEG-based prediction of delayed cerebral ischemia after subarachnoid hemorrhage
+    ARN: aws s3 ls s3://arn:aws:s3:us-east-1:184438910517:accesspoint/bdsp-restricted-access-point/ 
+    Region: us-east-1
+    Type: S3 Bucket
+    Explore: https://bdsp.io/content/saheeg
+
+  - Description: Cyclops - Automated detection of interictal epileptiform discharges with few EEG channels
+    ARN: aws s3 ls s3://arn:aws:s3:us-east-1:184438910517:accesspoint/bdsp-restricted-access-point/ 
+    Region: us-east-1
+    Type: S3 Bucket
+    Explore: https://bdsp.io/content/cyclops
+
+  - Description: E-CAM-S - Physiological Assessment of Delirium Severity via EEG
+    ARN: aws s3 ls s3://arn:aws:s3:us-east-1:184438910517:accesspoint/bdsp-restricted-access-point/ 
+    Region: us-east-1
+    Type: S3 Bucket
+    Explore: https://bdsp.io/content/e-cam-s
+
+  - Description: I-CARE - International Cardiac Arrest Research consortium EEG Database
+    ARN: aws s3 ls s3://arn:aws:s3:us-east-1:184438910517:accesspoint/bdsp-restricted-access-point/ 
+    Region: us-east-1
+    Type: S3 Bucket
+    Explore: https://bdsp.io/content/bdsp-icare
+
+  - Description: Morphological Prediction of CPAP Associated Acute Respiratory Instability
+    ARN: aws s3 ls s3://arn:aws:s3:us-east-1:184438910517:accesspoint/bdsp-restricted-access-point/ 
+    Region: us-east-1
+    Type: S3 Bucket
+    Explore: https://bdsp.io/content/selfsim
+
+  - Description: Ordinal Sleep Depth - Data and Code
+    ARN: aws s3 ls s3://arn:aws:s3:us-east-1:184438910517:accesspoint/bdsp-restricted-access-point/ 
+    Region: us-east-1
+    Type: S3 Bucket
+    Explore: https://bdsp.io/content/ordinal-sleep-depth
+
+  - Description: Quantifying Loop Gain using Dynamical Modelling of Ventilatory Control
+    ARN: aws s3 ls s3://arn:aws:s3:us-east-1:184438910517:accesspoint/bdsp-restricted-access-point/ 
+    Region: us-east-1
+    Type: S3 Bucket
+    Explore: https://bdsp.io/content/hlg-data-code
+
+  - Description: Real-Time Segmentation of Burst Suppression Patterns in Critical Care EEG Monitoring
+    ARN: aws s3 ls s3://arn:aws:s3:us-east-1:184438910517:accesspoint/bdsp-restricted-access-point/ 
+    Region: us-east-1
+    Type: S3 Bucket
+    Explore: https://bdsp.io/content/bsupp
+
+  - Description: Sleep Recordings from Wearable Devices in Meditators
+    ARN: aws s3 ls s3://arn:aws:s3:us-east-1:184438910517:accesspoint/bdsp-restricted-access-point/ 
+    Region: us-east-1
+    Type: S3 Bucket
+    Explore: https://bdsp.io/content/meditate
+
+  - Description: SPaRCNet - Seizures, Rhythmic and Periodic Patterns in ICU EEG
+    ARN: aws s3 ls s3://arn:aws:s3:us-east-1:184438910517:accesspoint/bdsp-restricted-access-point/ 
+    Region: us-east-1
+    Type: S3 Bucket
+    Explore: https://bdsp.io/content/bdsp-sparcnet
+
+  - Description: SpikeNet 2.0 - Deep learning model for epileptiform discharges in EEG
+    ARN: aws s3 ls s3://arn:aws:s3:us-east-1:184438910517:accesspoint/bdsp-restricted-access-point/ 
+    Region: us-east-1
+    Type: S3 Bucket
+    Explore: https://bdsp.io/content/spikenet2
+
+  - Description: TEEGLLTEEG - This EEG Looks Like That EEG
+    ARN: aws s3 ls s3://arn:aws:s3:us-east-1:184438910517:accesspoint/bdsp-restricted-access-point/ 
+    Region: us-east-1
+    Type: S3 Bucket
+    Explore: https://bdsp.io/content/teegllteeg
+
+  - Description: Targeted Metabolomics in the REGARDS Stroke Case-Cohort Study
+    ARN: aws s3 ls s3://arn:aws:s3:us-east-1:184438910517:accesspoint/bdsp-restricted-access-point/ 
+      Region: us-east-1
+      Type: S3 Bucket
+      Explore: https://bdsp.io/content/tmrsccs
+
+  - Description: Cerebrospinal Fluid Testing for Neuroinvasive West Nile Virus (CSF-WNV dataset)
+    ARN: aws s3 ls s3://arn:aws:s3:us-east-1:184438910517:accesspoint/bdsp-restricted-access-point/ 
+     Region: us-east-1
+     Type: S3 Bucket
+     Explore: https://bdsp.io/content/csf-wnv/1.0.0/
+
+  - Description: Continuous EEG Predicts Delayed Cerebral Ischemia After SAH
+    ARN: aws s3 ls s3://arn:aws:s3:us-east-1:184438910517:accesspoint/bdsp-restricted-access-point/ 
+    Region: us-east-1
+    Type: S3 Bucket
+    Explore: https://bdsp.io/content/ceeg-sah-hemorrhage-dind/1.0/
+