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Added border and hatch options in qtldf #14

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Added border and hatch options in qtldf #14

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6d62d0e
Add border L524 in qtldf
chabrault Apr 30, 2020
cdc4f7f
add hatch option
chabrault Apr 30, 2020
e802afb
Correct hatch with density parameter
chabrault Apr 30, 2020
f4baa2c
Fix error
chabrault Apr 30, 2020
a07727a
Fix error
chabrault Apr 30, 2020
5eebb37
Remove write
chabrault Apr 30, 2020
3981fbb
Update parameters in qtldf
chabrault Apr 30, 2020
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8 changes: 7 additions & 1 deletion R/drawone.R
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Original file line number Diff line number Diff line change
Expand Up @@ -456,6 +456,11 @@ drawone <-
# determine x position of qtl

if (nrow(qtldf) > 0) {
hatch <- 0
if(!is.null(qtldf$hatch))
hatch <- ifelse(qtldf$hatch, 30, NA) # if hatch is TRUE, set density to 30
if(is.null(qtldf$border))
qtldf$border <- NA
for (ql in 1:nrow(qtldf)) {
# if there are labels on y axis where qtl needs to be drawn
# first decide if QTL line (so to eo) or text label is longest
Expand Down Expand Up @@ -521,7 +526,8 @@ drawone <-
x2[1] + posmult * (qtlxpos + strwidth("M") + lgwpct / 3),
qtldf$ei[ql],
col = qtldf$col[ql],
border = qtldf$col[ql]
density = hatch[ql],
border = qtldf$border[ql]
)
text(
x2[1] + posmult * (qtlxpos + strwidth("MM") + lgwpct / 3),
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2 changes: 2 additions & 0 deletions R/lmv.linkage.plot.R
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Expand Up @@ -186,6 +186,8 @@
#' \item ei End of inner interval. Numeric.
#' \item eo End of outer interval. Numeric.
#' \item col Color for QTL.
#' \item border Color of QTL rectangle border (optionnal)
#' \item hatch Hatch or not QTL rectangle (optionnal). Logical.
#' }
#'
#' @param qtlscanone Optional scanone data frame from package r/qtl. If provided,
Expand Down