Using OLS validation as fallback for extended taxon IDs (SCP-6070) #2329
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
BACKGROUND & CHANGES
This update mirrors behavior in broadinstitute/scp-ingest-pipeline#402 to use OLS as a fallback validation for taxon IDs that do not appear in the "slim" minified version we use for both client- and server-side validation. This allows for a greater breadth of values while still maintaining quick validation in most cases.
MANUAL TESTING
test/test_data/anndata/valid_extended_taxon.h5adand confirm no errors are found