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In this PR,
bedbase output schemas were added

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Minor changes and some questions.

khoroshevskyi and others added 3 commits February 20, 2024 18:36
Co-authored-by: Donald Campbell <125581724+donaldcampbelljr@users.noreply.github.com>
Co-authored-by: Donald Campbell <125581724+donaldcampbelljr@users.noreply.github.com>
Co-authored-by: saanikat <114712639+saanikat@users.noreply.github.com>
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this is a pephub output schema, describing minimal columns needed for pephub.

BED Attribute Standardizer Output Schema (BASOS)

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nsheff commented Feb 20, 2024

maybe rename the pipelines/bedboss.yaml or standarize the naming and namespacing somehow?

That's an input schema, I guess?

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nsheff commented Feb 20, 2024

for filename, instead of output_schema maybe bedboss_output or bedboss_metadata_output ?

Co-authored-by: saanikat <114712639+saanikat@users.noreply.github.com>
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4 participants