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CI May update #1

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@courtneyjean courtneyjean commented May 26, 2020

Changes from additional work during masters thesis to:

  • Add some additional segmentation evaluation functions to the segmentation module
  • Resolve the color encoding error by only using the first color channel
  • Add details of the dicom colour scheme to databases (to support error checking)
  • Removed a number of unnecessary function incorrectly left in d04_segmentation/segment_utils.py

courtneyjean added 11 commits May 10, 2020 11:10
@courtneyjean
added function to create a colour scheme lookup table
0395a83
@courtneyjean
little bug fix on the union of tables'
bb36665
@courtneyjean
added a couple of lines of code to filter out any blank masks from th…
e74055c 
…e ground truth table
@courtneyjean
removed the resnet features from the Zhang code that aren’t required
2a0cbe7
@courtneyjean
updated download_dcm file to use just the first colour channel; overc…
82f8135 
…oming rbg, ybr conversion issues
@courtneyjean
the evaluate mask function updated to calculate a range of evaluation…
cf9a6e3 
… measures
@courtneyjean
created additional database tables for identifing studies with segmen…
12209d2 
…tation labels
@courtneyjean
updated segment views to use the model specified in path parameters; …
824d8d3 
…and to record additional details of np arrays in db
@courtneyjean
added additional rows to the db for seg evaluation and prediction
ed7356d
@courtneyjean
added additional rows to the db for seg evaluation and prediction
f7406e5
@courtneyjean
cleaning up extra logging statements
ae88cb4
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