Register datasets as a revision if protected on Alyx

Release 2.18

features

• brainbox.modeling removed
• brainbox.io.one.load_trials_df removed, use one.load_object(...).to_df() instead
• AWS DataHandler refactored (ibllib.oneibl.aws removed)
• raise error when saving an empty dataset during extraction
• removed deprecated dsp packages (ibllib.dsp, ibllib.ephys.neuropixel, ibllib.io.spikeglx)
• register datasets as a revision if protected on Alyx

bugfixes

• frameData and timestamps both optional datasets for camera QC
• for 3B probes don't glob the sync files as fails for NP2 case
• support iblutil 1.4 (iblutil.util.get_logger -> iblutil.util.setup_logger)

Wheel smoothing update

• Compute wheel velocity using a low-pass filter instead of a Gaussian window smoothing
• Save widefield output plots in png format
• Widefield Sync task uses sync_collection argument
• Improve boundary display for atlas slice plots

2.17.1

requirements for ONE-api and slidingRP

2.17.0

What's Changed

• Metrics by @oliche in #521
• Release/2.17.0 by @oliche in #522

Full Changelog: 2.16.1...2.17.0

2.16.1

What's Changed

• Fp fixes by @oliche in #520

Full Changelog: 2.16...2.16.1

Release 2.16.0

What's Changed

• fix for passive stim alignment by @mayofaulkner in #517
• Swanson by @oliche in #515
• set data_repos to exist = False when specifying specific data repo by @mayofaulkner in #518
• Develop by @mayofaulkner in #519

Release 2.15.3

• SessionLoader error handling and bug fix

Release 2.15.2

• extraction pipeline: fix unpacking of empty arguments field from alyx dict that prevents running tasks

Release 2.15.1

• atlas: gene-expression backend and MRI Toronto atlas stretch and squeeze factors @dbirman @oliche #509 #513
• FDR correction (Benjamin-Hochmann) to correct for multiple testing optional @guidomeijer #506
• SpikeSortingLoader can be used with ONE local mode @juhuntenburg #514

Dynamic Pipeline

What's Changed

• Cleanup by @oliche in #501
• Remove hold on tasks if parent is Incomplete by @juhuntenburg in #505
• Widefield2 by @k1o0 in #504
• CI QC Tests by @k1o0 in #507
• Kim atlas by @mayofaulkner in #508
• Task data repo by @mayofaulkner in #510
• Fiberphotometry by @oliche in #512

Full Changelog: 2.14.0...2.15.0