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I implemented Meta AI's ESM-2 protein language model in MLX! I've included:

  • Complete ESM-2 implementation (8M to 15B parameter models)
  • HuggingFace model conversion script
  • Benchmarking scripts which show ~34% speedup over PyTorch MPS on my M4 MacBook Pro
  • Example notebooks for using the model
  • Tests validating equivalence with original implementation

The key to this is in the notebooks that guide you through using the model.

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