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6 changes: 3 additions & 3 deletions .nf-core.yml
Original file line number Diff line number Diff line change
@@ -1,7 +1,7 @@
lint:
files_unchanged:
- docs/images/nf-core-coproid_logo_light.png
- docs/images/nf-core-coproid_logo_dark.png
- docs/images/nf-core-coproid_logo_light.png
- docs/images/nf-core-coproid_logo_dark.png
nf_core_version: 3.2.0
repository_type: pipeline
template:
Expand All @@ -13,4 +13,4 @@ template:
org: nf-core
outdir: .
skip_features: []
version: 2.0.0
version: 2.1.0dev
1 change: 1 addition & 0 deletions CHANGELOG.md
Original file line number Diff line number Diff line change
Expand Up @@ -15,6 +15,7 @@ This release is a complete rewrite of the original nf-core/coproid pipeline, ori
- sam2lca is now used for computing the endogenous host DNA quantity, instead of custom python scripts, allowing for handling more flexibly test host genomes.
- Pipeline reporting is now performed using Quarto, instead of Jupyter notebook
- Minor JSON schema updates
- Bumped version to 2.1.0dev

### New

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7 changes: 4 additions & 3 deletions assets/multiqc_config.yml
Original file line number Diff line number Diff line change
@@ -1,7 +1,8 @@
report_comment: >
This report has been generated by the <a href="https://github.com/nf-core/coproid/releases/tag/2.0.0" target="_blank">nf-core/coproid</a>
analysis pipeline. For information about how to interpret these results, please see the
<a href="https://nf-co.re/coproid/2.0.0/docs/output" target="_blank">documentation</a>.
This report has been generated by the <a href="https://github.com/nf-core/coproid/tree/dev"
target="_blank">nf-core/coproid</a> analysis pipeline. For information about how
to interpret these results, please see the <a href="https://nf-co.re/coproid/dev/docs/output"
target="_blank">documentation</a>.
report_section_order:
general_stats:
order: 1000
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2 changes: 1 addition & 1 deletion nextflow.config
Original file line number Diff line number Diff line change
Expand Up @@ -263,7 +263,7 @@ manifest {
mainScript = 'main.nf'
defaultBranch = 'master'
nextflowVersion = '!>=24.10.0'
version = '2.0.0'
version = '2.1.0dev'
doi = ''
}

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