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Add minimac4 imputation subworkfllow #9451
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Merged
LouisLeNezet
merged 17 commits into
nf-core:master
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LouisLeNezet:vcf_impute_minimac4
Dec 11, 2025
Merged
Add minimac4 imputation subworkfllow #9451
LouisLeNezet
merged 17 commits into
nf-core:master
from
LouisLeNezet:vcf_impute_minimac4
Dec 11, 2025
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famosab
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Dec 11, 2025
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Nice work!
Joon-Klaps
reviewed
Dec 11, 2025
vagkaratzas
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that referenced
this pull request
Dec 12, 2025
* Add vcf_impute_minimac4 * Update linting * Update test * Fix linting * Update minimac4 sbwf * Remove tag * Remove tag * Fix linting * Add comment * Update snapshot * Fix nf-test
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PR checklist
Add region to minimac command for parallelization purpose
Add minimac imputation subworkflow for vcf files.
versions.ymlfile.labelnf-core modules test <MODULE> --profile dockernf-core modules test <MODULE> --profile singularitynf-core modules test <MODULE> --profile condanf-core subworkflows test <SUBWORKFLOW> --profile dockernf-core subworkflows test <SUBWORKFLOW> --profile singularitynf-core subworkflows test <SUBWORKFLOW> --profile conda