Notebooks

[rbarillot]

Hi,

@pradal and @baugetfa : could you please have a look to the 2 notebooks I added in the directory 'example\Notebooks'?

In particular, I have the following questions:

• are they illustrative enough?
• I have used some ipywidgets. Should the library be added to the dependancies of WheatFspm now?
• I wanted to add some pgljupyter widgets to visualise the plant architecture originating from the adel-mtg. Is there a standard installation for those widgets now?
• Should I include a binder container to allow for the notebooks to be run on-line?

TY

[baugetfa]

I will have look this afternoon.

To answer your questions:

ipywidgets
you can add the dependence in the pyproject.toml file in the section doc.

pglviewer
openalea widgets can be installed as follow

mamba install -c openalea3 -c conda-forge openalea.widgets

then you can see examples of how to use it there

binder
At this stage, it is not in the guidelines but it is still a good idea to have it.

[baugetfa]

Notebooks are very informative, therefore to explore the model possibilities this is nice.
They run almost perfectly, I just had to correct 2 things see my comments in the review.

[rbarillot]

Thank you very much @baugetfa for your review.
There is a last issue : I can't install the openalea widgets. The command you provided returns the following error:
error libmamba Could not solve for environment specs The following package could not be installed └─ openalea.widgets =* * does not exist (perhaps a typo or a missing channel). critical libmamba Could not solve for environment specs

I also tried conda install openalea3/label/dev::openalea.widgets but I got the error:
LibMambaUnsatisfiableError: Encountered problems while solving: nothing provides k3d needed by openalea.widgets-1.0.6.dev-pyh332efcf_0 Could not solve for environment specs The following package could not be installed └─ openalea.widgets =* * is not installable because it requires └─ k3d =* *, which does not exist (perhaps a missing channel).

[rbarillot]

Issues fixed

[baugetfa]

Just in case try:
create -n test -c openalea3/label/dev -c openalea3/label/rc openalea.widgets

[rbarillot]

I have the same error:
`Solving environment: failed

LibMambaUnsatisfiableError: Encountered problems while solving:

• nothing provides k3d needed by openalea.widgets-1.0.6.dev-pyh332efcf_0

Could not solve for environment specs
The following package could not be installed
└─ openalea.widgets =* * is not installable because it requires
└─ k3d =* *, which does not exist (perhaps a missing channel).`

[baugetfa]

Ok. Sorry I think what is missing is -c conda-forge I forgot it because it is by default on my system.

[rbarillot]

this worked, TY