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Stuart Lab

44 followers
https://stuartlab.org
@timoast

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signac signac Public

R toolkit for the analysis of single-cell chromatin data

R 398 102
fragtk fragtk Public

Fragment file toolkit

Rust 4

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Showing 10 of 12 repositories

remo-manuscript Public
Code to reproduce analyses shown in the REMO manuscript

stuart-lab/remo-manuscript’s past year of commit activity

R 0 0 0 0 Updated Dec 11, 2025
signac Public
R toolkit for the analysis of single-cell chromatin data

stuart-lab/signac’s past year of commit activity

R 398 102 17 2 Updated Dec 11, 2025
REMO Public
Regulatory element modules

stuart-lab/REMO’s past year of commit activity

R 0 0 0 0 Updated Dec 10, 2025
human-chromatin-atlas Public
Organization of published human adult and fetal scATAC-seq data

stuart-lab/human-chromatin-atlas’s past year of commit activity

Shell 0 0 0 0 Updated Dec 6, 2025
REMO.v1.GRCh38 Public

stuart-lab/REMO.v1.GRCh38’s past year of commit activity

R 0 0 0 0 Updated Dec 5, 2025
fragtk Public
Fragment file toolkit

stuart-lab/fragtk’s past year of commit activity

Rust 4 MIT 0 0 0 Updated Oct 21, 2025
spars Public
Disk-based sparse matrix stats

stuart-lab/spars’s past year of commit activity

Rust 6 MIT 0 0 0 Updated Aug 27, 2025
fragtk-benchmark Public
Benchmarking scATAC-seq count matrix quantification methods

stuart-lab/fragtk-benchmark’s past year of commit activity

Python 0 0 0 0 Updated May 3, 2025
cellranger-workflow Public

stuart-lab/cellranger-workflow’s past year of commit activity

Python 2 0 0 0 Updated Dec 30, 2024
aws-setup Public
AWS setup information and scripts

stuart-lab/aws-setup’s past year of commit activity

Shell 0 0 0 0 Updated Dec 19, 2023

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