Protein-protein interaction Binding Affinity Prediction

Framework for benchmarking RNA secondary structure prediction algorithms.

Welcome to the Open Source Computational Biology Master's

Scripts for analysing MD simulations of nanopores and DNA translocation (ionic current, translocation rate, pore hydrophobicity).

This repository contains different scripts used for the normal mode analysis of biomolecules with known crystal structures.

Micelle Maker source code

Sequester C as LIFE.

This GitHub repository contains the code and data for the manuscript "Dynamical control enables the formation of demixed biomolecular condensates" (BioRxiv link: https://www.biorxiv.org/content/10.1101/2023.01.04.522702v1)

A graph-based approach to investigate protein contacts evolution during a Molecular Dynamics simulation

Computational Molecular Biophysics Scripts

A tool that locates and lists the intramolecular interactions in each frame of a NetCDF MD trajectory file

Using statistical potentials g(r), graph theory and linear algebra to evaluate native-like docking poses

🧠🔬At the Cordeiro Lab, we investigate how intrinsically disordered proteins and biomolecular assemblies orchestrate cellular organization, pathogenic survival, and biotechnological innovation.