User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins

Interactive software tool for the assignment of cell types in single-cell studies.

simplified cellranger for long-read data

Single-cell identity definition using random forest modelling and recursive feature elimination

Deep Unsupervised Single-cell Clustering (DUSC) is a hybrid approach for cell type discovery in scRNA-seq data.

Single-Cell RNA-seq analysis workflow for 10x Genomics data

Recreation and enrichment of the gastric (GC) cancer single-cell RNA-seq (scRNA-seq) data analysis pipeline described in the "Comprehensive analysis of metastatic gastric cancer tumour cells using single‑cell RNA‑seq" by Wang B. et. al, using the raw counts matrix they provide.

An advanced computational biology project aimed at analyzing causal networks of space-induced neurodegeneration in mice using NASA's OSD-352 dataset and PC algorithm; Ultimately mapping findings to human genes for insights into neurodegenerative diseases and space health.

Original scripts for the manuscript "Sex shapes cell-type-specific transcriptional signatures of stress exposure in the mouse hypothalamus", Brivio et al. Cell Reports, 2023

Implementing GANs in the sc-RNA-Seq pipeline

sc-RNA-seq data analysis of cardiac development in zebrafish

A lightweight, pip-installable version of FedscGen.

In this reposity I will give you all script I created. All this script are specialised for one way : annalyse RNA-seq data.

My final project of the Master's in Bioinformatics and Computational Biology.

This repository is for ER+ breast cancer scRNA-seq data processing and figure generation.