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Pull requests: tskit-dev/tskit

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Pull requests list

Add link-ancestors to TreeSequence and ImmutableTableCollection
#3312 opened Nov 4, 2025 by benjeffery • Draft
1
9
Tolerate invalid parents when computing mutation parents
#3309 opened Nov 3, 2025 by benjeffery Loading… Python 1.0
1
10
Add json+binary codec
#3306 opened Oct 24, 2025 by benjeffery Loading…
16
Remove guard against internal samples when decoding genotypes
#3301 opened Oct 22, 2025 by benjeffery Loading… Python 1.0
15
Decoding haplotypes without trees
#3298 opened Oct 16, 2025 by benjeffery • Draft
3
Add isolated_as_missing to ts.alignements
#3294 opened Oct 14, 2025 by benjeffery Loading… Python 1.0
1
7
time windows for general_stat (branch mode)
#3271 opened Sep 16, 2025 by petrelharp • Draft
1
Unifying stat method desc and linking to math summary
#3005 opened Sep 28, 2024 by gregorgorjanc Loading… Python 0.6.5
5
Support all-nodes matching in LSHMM
#2861 opened Oct 12, 2023 by jeromekelleher • Draft
1
Add tests for genotype imputation
#2815 opened Aug 7, 2023 by szhan Loading…
3 of 6 tasks
Python 0.6.5
1
@szhan
28
Add docs discussing how to get a matrix of pairwise comparisons
#2776 opened Jul 5, 2023 by hyanwong Loading… Python 0.6.5
4
Generic iterator class for trees and variants
#2762 opened Jun 13, 2023 by hyanwong • Draft
2 of 3 tasks
Python 0.6.5
1
1
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