CLAE

The CLAE toolkit is a Python based toolkit. It is developed and tested with Python 3.6 and should be compatible with Python 3.6-3.9.

This toolkit will generate consensus sequences using the RCA reads.

Please check detailed documentation here

Requirements

The version below is for reference. You may be able to run it with newer version of those packages.

• python>=3.6
• numpy==1.17.2
• Bio==0.4.1
• pandas==1.2.4
• tqdm==4.60.0The version below is for reference. You may be able to run it with newer version of those packages.

Dependencies

• BLAT

• BLAST

• Blasr

• Sparc

• pbdagcon