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Reuse Bioluigi definitions for RSEM tasks

Status: Open (in progress).

PavlidisLab/rnaseq-pipelinenumber 70

#70 In PavlidisLab/rnaseq-pipeline;

· arteymix opened on Feb 9, 2022

Remove --taxon argument

Status: Open.

#13 In PavlidisLab/rnaseq-pipeline;

· arteymix opened on Oct 21, 2019

Integrate Cell Ranger for reprocessing single-cell datasets based on 10x Chromium

Status: Open.

Feature

#97 In PavlidisLab/rnaseq-pipeline;

· arteymix opened on Apr 24, 2025

Add support for Cell Ranger

Status: Draft (not ready).

PavlidisLab/rnaseq-pipelinenumber 101

#101 In PavlidisLab/rnaseq-pipeline;

· arteymix opened on Sep 13, 2025

RSEM temporary file cleanup does not always work

bug

Status: Open.

#39 In PavlidisLab/rnaseq-pipeline;

· arteymix opened on Feb 27, 2020