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Snakemake

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  1. snakemake snakemake Public

    This is the development home of the workflow management system Snakemake. For general information, see

    Python 2.5k 601

  2. snakemake-wrappers snakemake-wrappers Public

    This is the development home of the Snakemake wrapper repository, see

    Python 231 195

  3. snakefmt snakefmt Public

    The uncompromising Snakemake code formatter

    Python 173 34

  4. snakemake-github-action snakemake-github-action Public

    A Github action for running a Snakemake workflow

    59 14

  5. snakemake-executor-plugin-slurm snakemake-executor-plugin-slurm Public

    A Snakemake executor plugin for submitting jobs to a SLURM cluster

    Python 39 34

  6. snakemake-workflow-catalog snakemake-workflow-catalog Public

    A statically generated catalog of available Snakemake workflows

    Python 35 11

Repositories

Showing 10 of 62 repositories
  • snakemake-workflow-catalog Public

    A statically generated catalog of available Snakemake workflows

    snakemake/snakemake-workflow-catalog’s past year of commit activity
    Python 35 MIT 11 4 0 Updated Jul 24, 2025
  • snakedeploy Public

    deploy a snakemake pipeline directly from version control (under development)

    snakemake/snakedeploy’s past year of commit activity
    Python 24 MPL-2.0 10 12 3 Updated Jul 24, 2025
  • snakemake-interface-scheduler-plugins Public

    This package provides a stable interface for interactions between Snakemake and its scheduler plugins.

    snakemake/snakemake-interface-scheduler-plugins’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Jul 24, 2025
  • snakemake Public

    This is the development home of the workflow management system Snakemake. For general information, see

    snakemake/snakemake’s past year of commit activity
    Python 2,529 MIT 601 1,129 (1 issue needs help) 91 Updated Jul 24, 2025
  • snakemake-interface-common Public

    Common functions and classes for Snakemake and its plugins

    snakemake/snakemake-interface-common’s past year of commit activity
    Python 0 MIT 4 2 1 Updated Jul 24, 2025
  • mastodon-release-post-action Public

    GitHub action to facilitate posting release notes on Mastodon

    snakemake/mastodon-release-post-action’s past year of commit activity
    Python 0 MIT 0 0 1 Updated Jul 23, 2025
  • snakemake-executor-plugin-cluster-sync Public

    A Snakemake executor plugin for generic cluster jobs that are executed synchronously.

    snakemake/snakemake-executor-plugin-cluster-sync’s past year of commit activity
    Python 0 MIT 0 0 1 Updated Jul 23, 2025
  • snakemake-executor-plugin-kubernetes Public

    A snakemake executor plugin for submission of jobs to Kubernetes

    snakemake/snakemake-executor-plugin-kubernetes’s past year of commit activity
    Python 3 MIT 9 2 5 Updated Jul 23, 2025
  • snakemake-executor-plugin-slurm Public

    A Snakemake executor plugin for submitting jobs to a SLURM cluster

    snakemake/snakemake-executor-plugin-slurm’s past year of commit activity
    Python 39 MIT 34 34 5 Updated Jul 23, 2025
  • snakefmt Public

    The uncompromising Snakemake code formatter

    snakemake/snakefmt’s past year of commit activity
    Python 173 MIT 34 17 1 Updated Jul 22, 2025
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