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Pull requests: snakemake/snakemake-wrappers

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Pull requests list

perf: autobump bio/samtools/mpileup bio/samtools/mpileup
#4378 opened Jul 18, 2025 by snakedeploy-bot bot Loading…
2
feat: add temp dir and code refactor
#4319 opened Jul 11, 2025 by fgvieira Loading…
7 tasks done
2
chore(master): release 7.3.0 autorelease: pending
#4313 opened Jul 11, 2025 by snakemake-bot Loading…
1
perf: autobump bio/pyfastaq/replace_bases bio/pyfastaq/replace_bases
#4000 opened Apr 11, 2025 by snakedeploy-bot bot Loading…
2
feat: Add mmseqs2 main workflows
#3981 opened Apr 4, 2025 by fgvieira • Draft
7 tasks done
1
fix: bug when rescaling BAM
#3687 opened Mar 4, 2025 by fgvieira Loading…
7 tasks done
1
3
perf: autobump bio/ngscheckmate/ncm bio/ngscheckmate/ncm
#3542 opened Dec 13, 2024 by snakedeploy-bot bot Loading…
2
feat: bowtie2 can now sort with samtools and picard
#3518 opened Dec 3, 2024 by jlanga Loading…
7 tasks done
42
perf: autobump bio/rubic bio/rubic
#3364 opened Oct 25, 2024 by snakedeploy-bot bot Loading…
1
feat: added wrapper for Paraphase Stale
#3071 opened Jul 15, 2024 by MagdalenaZZ Loading…
1 task done
@fgvieira
75
feat: Add a wrapper for quarto markdown rendering
#3003 opened Jun 20, 2024 by votti Loading…
1 task done
32
feat: ensembl reference collections
#2977 opened Jun 3, 2024 by mauripops Loading…
1 task done
12
feat: Add configurable protocol support to ensembl reference download
#2649 opened Feb 15, 2024 by pettyalex Loading…
1 task done
12
feat: add Orthanq wrappers for hla and virus applications
#2640 opened Feb 4, 2024 by huzuner Loading…
1 task
18
feat: add wrapper for metaDMG Stale
#1809 opened Sep 19, 2023 by fgvieira • Draft
1 task done
1
feat: add ngsngs wrapper Stale
#1808 opened Sep 19, 2023 by fgvieira • Draft
1 task done
1
feat: new inphared-db wrapper
#1550 opened Jul 20, 2023 by nacnoriko Loading…
1 task
18
feat: add wrapper for rbt vcf_fix_iupac_alleles
#1209 opened Apr 5, 2023 by fgvieira Loading…
1 task done
8
fix: Allow concurrent and large refgenie downloads
#1172 opened Mar 28, 2023 by Austin-s-h Loading…
1 task done
13
perf: autobump bio/dragmap/align bio/dragmap/align
#775 opened Nov 4, 2022 by snakedeploy-bot bot Loading…
3
Update wrapper documentation Stale
#392 opened Jul 22, 2021 by tdayris Loading…
10 of 12 tasks
6
Add GATK ValidateVariants stale: contribution welcome Please feel free to finalize this work. Stale
#390 opened Jul 19, 2021 by G-kodes Loading…
12 tasks done
7
Add cosmic database download wrapper stale: contribution welcome Please feel free to finalize this work. Stale
#345 opened Apr 22, 2021 by tedil Loading…
17
Add checksum verification for ENSEMBL sequence and annotation wrappers stale: contribution welcome Please feel free to finalize this work.
#36 opened Dec 4, 2019 by fritjoflammers Loading…
9
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