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site-frequency-spectrum

Here are 3 public repositories matching this topic...

jeffersonfparil / poolgen

Quantitative and population genetics analyses of populations, pools, half-sib/full-sib families, and polyploids

bioinformatics gwas evolution population-genetics families genomic-selection polyploid quantitative-genetics allele-frequencies heterozygosity genomic-prediction pool-sequencing site-frequency-spectrum pool-seq-data

Updated Aug 11, 2025
Rust

MafaldaSFerreira / Atlherr_inversion_evol

Evolutionary genomics of chromosomal inversions in Atlantic herring

genomics pca dnds-estimation phylogenomics genotype transposable-elements recombination fst long-reads evolutionary-biology nucleotide-diversity whole-genome-alignment dxy inversions gatk4 short-reads site-frequency-spectrum

Updated Apr 22, 2024
R

NCD-Statistics

bbitarello / NCD-Statistics

Code for NCD1 and NCD2 statistics to detect long-term balancing selection

sfs allele-frequencies balancing-selection ncd-statistics site-frequency-spectrum

Updated Jul 5, 2022
R

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